MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model
Genome Biology (2004) - Comment
pubmed: 15575972  doi: 10.1186/gb-2004-5-12-r98  issn: 1474-760x  issn: 1465-6906 

Alan M Moses, Derek Y Chiang, Daniel A Pollard, Venky N Iyer, Michael B Eisen